Primary immunodeficiency

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Clinical Manifestations

Immune Defect Typical Infections Typical Organisms
cell-mediated (T cells) persistent viral infections, opportunistic infections, disseminated infections Pneumocystis jirovecii, Cryptococcus, Herpesviridae
humoural (B cells) respiratory infections with encapsulated organisms, chronic diarrhea, aseptic meningitis Haemophilus influenzae, Streptococcus pneumoniae, Giardia lamblia, Campylobacter, enteroviruses
phagocytic recurrent abscesses, gingivitis, aphthous ulcers Staphylococcus aureus, Burkholderia cepacia, Serratia marcescens, Aspergillus, Nocardia
monocytic disseminated infections and multifocal osteomyelitis non-tuberculous mycobacteria, Salmonella, Histoplasma capsulatum, Coccidioides immitis
TLR recurrent meningitis, bacteremia, absence of fever Streptococcus pneumoniae, Neisseria meningitidis, Staphylococcus aureus, HSV
complement recurrent bacteremia and meningitis Neisseria
T cells and phagocytes eczema, kyphoscoliosis, pathologic fratures, pulmonary and cutaneous infections, mucocutaneous candidiasis Staphylococcus aureus, Haemophilus influenzae, Streptococcus pneumoniae, Candida albicans

Differential Diagnosis

Children

Disease Defect Age at Diagnosis Notes
Humoural (65%)
X-linked agammaglobulinemia BTK mutation X-linked, very low antibody levels
Common variable immunodeficiency (CVID) multiple 20-40 years low IgG with poor antibody response
Transient hypogammaglobulinemia of infancy
Hyper-IgM syndrome multiple X-linked or autosomal recessive, high IgM with poor T-cell function
IgA deficiency decreased IgA low IgA, often associated with other immunodeficiencies
Cell-Mediated (5%)
DiGeorge syndrome thymus aplasia
Chronic mucocutaneous candidiasis
Combined (15%)
Severe combined immunodeficiency disease (SCID) near-absolute T cell deficiency lymphopenia with hypogammaglobulinemia
Wiskott-Aldrich syndrome WASP mutation X-linked, eczema, thrombocytopenia, low IgM with high IgA
Ataxia-telangiectasia ATM mutation autosomal recessive, with low IgA, CD3, and CD4, and malignancies
X-linked lymphoproliferative disease SAP mutation X-linked, low EBNA antibodies
CD40 ligand deficiency
Hyper-IgE syndrome (Job syndrome) STAT3 mutation eczema, pneumatoceles, mucocutaneous candidiasis, recurrent cutaneous and respiratory infections, and elevated IgE
Phagocytic (10%)
Chronic granulomatous disease (CGD) NADPH oxidase GI and GU granulomas, infections with Staphylococcus aureus, Burkholderia cepacia, Serratia marcescens, Nocardia, and Aspergillus
Leukocyte adhesion deficiency multiple types autosomal recessive
TLR3 deficiency recurrent HSV encephalitis
Complement (5%)
C2 deficiency and other classical complement deficiencies classical complement pathway low CH50, autoimmune disease in C1-C4, bacteremia and meningitis
Properdin deficiency alternative complement pathway more severe than classical complement deficiencies
Immune Dysregulation
Hemophagocytic lymphohistiocytosis
Autoimmune lymphoproliferative disorder (ALPS)
Immunodysregulation, polyendocrinopathy, enteropathy, X-linked (IPEX)
Autoimmune polyendocrinopathy, candidiasis, and ectodermal dystrophy (APECED)

Adults

Disease Arm of Immune System
Adult-Onset Common
IgA deficiency Humoural
Common variable immunodeficiency Humoural
IgG subclass deficiency Humoural
Complement deficiencies Complement
Delayed Presentation Possible
Adenosine deaminase deficiency Combined
Wiskott-Aldrich syndrome Combined
X-linked agammaglobulinemia Humoural
Chronic granulomatous disease Phagocytic
Childhood Onset with Survival to Adulthood
Common variable immunodeficiency Humoural
IgA deficiency Humoural
IgG subclass deficiency Humoural
Complement deficiencies Complement
X-linked agammaglobulinemia Humoural
X-linked hyper-IgM syndrome Humoural
Chronic granulomatous disease Phagocytic
Severe combined immunodeficiency Combined
Wiskott-Aldrich syndrome Combined
Ataxia-telangiectasia Combined
Leukocyte adhesion deficiency Phagocytic

Red Flags for Immunodeficiency

Children

  • ≥4 new ear infections in 1 year
  • ≥2 serious sinus infections in 1 year
  • ≥2 months on antibiotics with little effect
  • ≥2 pneumonias in 1 year
  • Failure to gain weight or grow normally
  • Recurrent deep skin or organ abscesses
  • Persistent thrush in mouth or fungal skin infection
  • Need for IV antibiotics to treat infections
  • ≥2 deep-seated infections including bacteremia
  • A family history of primary immunodeficiency

Adults

  • ≥2 new ear infections in 1 year
  • ≥2 new sinus infections in 1 year (in the absence of allergy)
  • ≥2 new pneumonias in 2 years
  • Chronic diarrhea with weight loss
  • Recurrent viral infections, such as colds, herpes, warts, or condylomata
  • Recurrent need for IV antibiotics to treat infections
  • Recurrent, deep abscesses of skin or internal organs
  • Persistent thrush or fungal infections
  • Infection with non-tuberculous mycobacteria
  • A family history of primary immunodeficiency

Investigations

  • CBC and peripheral blood film, for lymphopenia, abnormal or unusual lymphocytes or phagocytes, and any other notable abnormalities
    • Lymphopenia may suggest T-cell immunodeficiency
  • For suspected defect in humoural immunity
    • Serum immunoglobulin levels (IgG, IgM, IgA, and IgE)
    • Specific antibody titres
    • Pre- and post-vaccination IgG titres
    • Flow cytometry to count B cells
  • For suspected defect in cellular immunity
    • TREC newborn screen
    • Flow cytometry to count CD4 and CD8 T-cells and NK cells
      • Flow cytometry is almost always abnormal in SCID
    • Cutaneous delayed hypersensitivity
    • Spontaneous NK cytotoxicity
  • For suspected deficiencies in phagocytes
    • CBC and differential
    • Neutrophil staining for morphology on a peripheral blood film
    • Dihydrorhodamine 1,2,3 response (DHR) for neutrophil function
    • Flow cytometry for adhesion molecules
  • For suspected complement deficiencies
    • CH50 assay (for total complement activity)
    • AH50 assay (for alternative pathway activity)
    • Lectin pathway function
    • Level and/or function of specific complement factors

Further Reading

  • Primary immunodeficiency. Allergy Asthma Clin Immunol. 2018;14(Suppl 2):61. doi: 10.1186/s13223-018-0290-5
  • Attending to Warning Signs of Primary Immunodeficiency Diseases Across the Range of Clinical Practice. J Clin Immunol. 2014;34(1):10-22. doi: 10.1007/s10875-013-9954-6
  • Primary Immunodeficiency Diseases: an Update on the Classification from the International Union of Immunological Societies Expert Committee for Primary Immunodeficiency 2015. J Clin Immunol. 2015;35(8):696-726. doi: 10.1007/s10875-015-0201-1