Influenza virus

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Background

Virology

  • Enveloped, single-stranded, negative-sense RNA virus in the Orthomyxoviridae family
  • Four genera corresponding to influenza A through D
    • A infects humans, pigs, horses, birds, and marine mammals
      • Most prone to antigenic shift
      • Most likely to cause epidemics and pandemics
      • Typed by hemagglutinin (HA) (H1, H2, H3) and neuraminidase (NA) (N1, N2) proteins
        • H1N1 and H3N2 are the two types that have caused the larges outbreaks in recent decades
    • B infects humans alone
      • Two major lineages, B/Victoria and B/Yamagata
    • C infects humans and pigs, and causes milk illness
    • D infects cattle alone, as far as we know

Epidemiology

  • Worldwide
  • Seasonal in temperate climates, lasting from fall through spring and peaking in late winter
  • Birds are the main reservoir for influenza A
  • Influenza mutations are classified as antigenic drift (small mutations) and antigenic shift (large changes due to reassortment)
    • Antigenic drift usually results in local outbreaks, while antigenic shift can result in epidemic or pandemics
    • Antigenic shift only really happens in influenza A, due to the reassortment that can happen in its multiple hosts
  • In Canada, kills around 3500 people annually
  • Thought to be infectious 1 day before to 5 days after symptom onset

Clinical Manifestations

  • Incubation period of 1 to 2 days (range 1 to 4 days)
  • Uncomplicated disease causes fevers, chills, rigors, headaches, myalgia, malaise, and anorexia
    • Often abrupt onset
    • The myalgias and headache are often quite notable
    • Can also have pain with ocular abduction, arthralgia without arthritis, tearing and burning in the eyes
    • Fever and other systemic symptoms typically lasts 3 days (range 4 to 8 days)
    • More prominence of systemic symptoms than many other respiratory infection
    • Respiratory symptoms can include non-productive cough, sore throat, and nasal symptoms
      • Cough and some of the other symptoms may persist after the systemic symptoms improve
  • Viral pneumonia starts with typical influenza, followed by cough, dyspnea, cyanosis, and hypoxemia
    • Chest x-ray may show diffuse bilateral disease
  • Secondary bacterial pneumonia starts with typical pneumonia, followed by a few days to 2 weeks of improvement before reemergence of fever and respiratory symptoms
    • However, it can overlap with the viral infection
  • Extrapulmonary manifestations include myositis (mostly in children but can happen in adults), myocarditis, pericarditis, Guillain-Barré syndrome (influenza A), transverse myelitis, acute disseminated encephalomyelitis, encephalitis, Reye syndrome

Management

  • Neuraminidase inhibitors started within 48 hours of symptom onset are associated with a shorter duration of illness
  • Monitor for secondary bacterial pneumonia

Prevention

  • Annual influenza vaccination is recommended for everyone 6 months of age and older
    • Inactivate influenza vaccines (Fluzone, Fluviral, Influvac, Fluad), recombinant influenza vaccines, and live attenuated influenza vaccines (FluMist)
    • Egg-allergic patients can still be vaccinated using any influenza vaccine, including egg-based vaccines
  • Chemoprophylaxis with oseltamivir may be indicated as post-exposure prophylaxis or during local outbreaks for all people at risk